Lukas Trantirek: search on Z-Library

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1

A Method for Direct Determination of Helical Parameters in Nucleic Acids Using Residual Dipolar Couplings

Trantírek, Lukáš, Štefl, Richard, Feigon, Juli, Sklenář, Vladimír

Journal:

Journal of the American Chemical Society

Year:

2000

Language:

english

File:

PDF, 38 KB

english, 2000

2

NF449 Is a Novel Inhibitor of Fibroblast Growth Factor Receptor 3 (FGFR3) Signaling Active in Chondrocytes and Multiple Myeloma Cells

Krejci, Pavel, Murakami, Shunichi, Prochazkova, Jirina, Trantirek, Lukas, Chlebova, Katarina, Ouyang, Zhufeng, Aklian, Anie, Smutny, Jiri, Bryja, Vitezslav, Kozubik, Alois, Wilcox, William R.

Journal:

Journal of Biological Chemistry

Year:

2010

Language:

english

File:

PDF, 1.34 MB

english, 2010

3

Diverse effects of naturally occurring base lesions on the structure and stability of the human telomere DNA quadruplex

Konvalinová, Helena, Dvořáková, Zuzana, Renčiuk, Daniel, Bednářová, Klára, Kejnovská, Iva, Trantírek, Lukáš, Vorlíčková, Michaela, Sagi, Janos

Journal:

Year:

2015

Language:

english

File:

PDF, 2.67 MB

english, 2015

4

Effect of local sugar and base geometry on13C and15N magnetic shielding anisotropy in DNA nucleosides

Eva Brumovská, Vladimír Sychrovský, Zuzana Vokáčová, Jiří Šponer, Bohdan Schneider, Lukáš Trantírek

Journal:

Journal of Biomolecular NMR

Year:

2008

Language:

english

File:

PDF, 1.20 MB

english, 2008

5

Expression of FGF19 in human embryonic stem cells

Krejci, Pavel, Kunova, Michaela, Kubikova, Iva, Trantirek, Lukas, Kozubik, Alois, Dvorak, Petr

Journal:

Year:

2013

Language:

english

File:

PDF, 184 KB

english, 2013

6

Unusual Interstrand Pt(S,S-diaminocyclohexane)-GG Crosslink Formed by Rearrangement of a Classical Intrastrand Crosslink Within a DNA Duplex

Karel Kubíček, Jordan Monnet, Simone Scintilla, Jana Kopečná, Fabio Arnesano, Lukáš Trantírek, Claude Chopard, Giovanni Natile, Jiří Kozelka

Journal:

Chemistry – An Asian Journal

Year:

2010

Language:

english

File:

PDF, 485 KB

english, 2010

7

Solution Structure of the Complex Formed by the Two N-terminal RNA-binding Domains of Nucleolin and a Pre-rRNA Target

Carina Johansson, L.David Finger, Lukas Trantirek, Thomas D Mueller, Soyoun Kim, Ite A Laird-Offringa, Juli Feigon

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 3.44 MB

english, 2004

8

Erratum to: Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin–spin interactions

Vavrinská, Andrea, Zelinka, Jiří, Šebera, Jakub, Sychrovský, Vladimír, Fiala, Radovan, Boelens, Rolf, Sklenář, Vladimír, Trantírek, Lukáš

Journal:

Journal of Biomolecular NMR

Year:

2016

Language:

english

File:

PDF, 289 KB

english, 2016

9

Advances in the cellular structural biology of nucleic acids

Giassa, Ilektra-Chara, Rynes, Jan, Fessl, Tomas, Foldynova-Trantirkova, Silvie, Trantirek, Lukas

Journal:

Year:

2018

Language:

english

File:

PDF, 432 KB

english, 2018

10

Intrazelluläre NMR- und EPR-Spektroskopie von biologischen Makromolekülen

Hänsel, Robert, Luh, Laura M., Corbeski, Ivan, Trantirek, Lukáš, Dötsch, Volker

Journal:

Angewandte Chemie

Year:

2014

Language:

german

File:

PDF, 1.78 MB

german, 2014

11

In-Cell NMR and EPR Spectroscopy of Biomacromolecules

Hänsel, Robert, Luh, Laura M., Corbeski, Ivan, Trantirek, Lukáš, Dötsch, Volker

Journal:

Angewandte Chemie International Edition

Year:

2014

Language:

english

File:

PDF, 1.97 MB

english, 2014

12

NMR 13 C-relaxation Study of Base and Sugar Dynamics in GCAA RNA Hairpin Tetraloop

Trantírek, Lukáš, Caha, Erik, Kadeřávek, Pavel, Fiala, Radovan

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2007

Language:

english

File:

PDF, 615 KB

english, 2007

13

Triplex intermediates in folding of human telomeric quadruplexes probed by microsecond-scale molecular dynamics simulations

Stadlbauer, Petr, Trantírek, Lukáš, Cheatham, Thomas E., Koča, Jaroslav, Šponer, Jiří

Journal:

Year:

2014

Language:

english

File:

PDF, 2.18 MB

english, 2014

14

Notch stimulates growth by direct regulation of genes involved in the control of glycolysis and the tricarboxylic acid cycle

Slaninova, Vera, Krafcikova, Michaela, Perez-Gomez, Raquel, Steffal, Pavel, Trantirek, Lukas, Bray, Sarah J., Krejci, Alena

Journal:

Year:

2016

Language:

english

File:

PDF, 1.79 MB

english, 2016

15

Crystal Structures of T. brucei MRP1/MRP2 Guide-RNA Binding Complex Reveal RNA Matchmaking Mechanism

Maria A. Schumacher, Elham Karamooz, Alena Zíková, Lukáš Trantírek, Julius Lukeš

Journal:

Year:

2006

Language:

english

File:

PDF, 705 KB

english, 2006

16

High-Resolution Insight into G-Overhang Architecture

Hänsel, Robert, Löhr, Frank, Trantirek, Lukáš, Dötsch, Volker

Journal:

Journal of the American Chemical Society

Year:

2013

Language:

english

File:

PDF, 1.93 MB

english, 2013

17

Instability restricts signaling of multiple fibroblast growth factors

Buchtova, Marcela, Chaloupkova, Radka, Zakrzewska, Malgorzata, Vesela, Iva, Cela, Petra, Barathova, Jana, Gudernova, Iva, Zajickova, Renata, Trantirek, Lukas, Martin, Jorge, Kostas, Michal, Otlewski,

Journal:

Cellular and Molecular Life Sciences

Year:

2015

Language:

english

File:

PDF, 3.87 MB

english, 2015

18

In-Cell NMR Spectroscopy of Nucleic Acids in Human Cells

Viskova, Pavlina, Krafcik, Daniel, Trantirek, Lukas, Foldynova-Trantirkova, Silvie

Journal:

Current Protocols in Nucleic Acid Chemistry

Year:

2018

Language:

english

File:

PDF, 574 KB

english, 2018

19

ChemInform Abstract: In-Cell NMR and EPR Spectroscopy of Biomacromolecules

Haensel, Robert, Luh, Laura M., Corbeski, Ivan, Trantirek, Lukas, Doetsch, Volker

Journal:

Year:

2014

File:

PDF, 12 KB

2014

20

Parallel G-triplexes and G-hairpins as potential transitory ensembles in the folding of parallel-stranded DNA G-Quadruplexes

Stadlbauer, Petr, Kührová, Petra, Vicherek, Lukáš, Banáš, Pavel, Otyepka, Michal, Trantírek, Lukáš, Šponer, Jiří

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 4.73 MB

english, 2019

21

Indirect NMR Spin−Spin Coupling Constants 3J (P,C) and 2J (P,H) across the P−O···H−C Link Can Be Used for Structure Determination of Nucleic Acids

Sychrovský, Vladimír, Šponer, Jiří, Trantírek, Lukáš, Schneider, Bohdan

Journal:

Journal of the American Chemical Society

Year:

2006

Language:

english

File:

PDF, 214 KB

english, 2006

22

Guanine Bases in DNA G-Quadruplex Adopt Nonplanar Geometries Owing to Solvation and Base Pairing

Sychrovský, Vladimír, Sochorová Vokáčová, Zuzana, Trantírek, Lukáš

Journal:

Journal of Physical Chemistry A

Year:

2012

Language:

english

File:

PDF, 2.36 MB

english, 2012

23

Hairpins participating in folding of human telomeric sequence quadruplexes studied by standard and T-REMD simulations

Stadlbauer, Petr, Kührová, Petra, Banáš, Pavel, Koča, Jaroslav, Bussi, Giovanni, Trantírek, Lukáš, Otyepka, Michal, Šponer, Jiří

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.73 MB

english, 2015

24

Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin–spin interactions

Vavřinská, Andrea, Zelinka, Jiří, Šebera, Jakub, Sychrovský, Vladimír, Fiala, Radovan, Boelens, Rolf, Sklenář, Vladimír, Trantírek, Lukáš

Journal:

Journal of Biomolecular NMR

Year:

2016

Language:

english

File:

PDF, 720 KB

english, 2016

25

Structure of a Stable G-Hairpin

Gajarský, Martin, Živković, Martina Lenarčič, Stadlbauer, Petr, Pagano, Bruno, Fiala, Radovan, Amato, Jussara, Tomáška, L’ubomír, Šponer, Jiří, Plavec, Janez, Trantírek, Lukáš

Journal:

Journal of the American Chemical Society

Year:

2017

Language:

english

File:

PDF, 560 KB

english, 2017

26

Evaluation of stability of DNA i-motifs in the nuclei of living mammalian cells

Dzatko, Simon, Krafcikova, Michaela, Hänsel-Hertsch, Robert, Fessl, Tomas, Fiala, Radovan, Loja, Tomas, Krafcik, Daniel, Mergny, Jean-Louis, Foldynova-Trantirkova, Silvie, Trantirek, Lukas

Journal:

Angewandte Chemie International Edition

Year:

2017

Language:

english

File:

PDF, 2.92 MB

english, 2017

27

Pyramidalization of the Glycosidic Nitrogen Provides the Way for Efficient Cleavage of the N-Glycosidic Bond of 8-OxoG with the hOGG1 DNA Repair Protein

Šebera, Jakub, Trantírek, Lukáš, Tanaka, Yoshiyuki, Sychrovský, Vladimír

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 4.80 MB

english, 2012

28

G-quadruplex formation in the Oct4 promoter positively regulates Oct4 expression

Renčiuk, Daniel, Ryneš, Jan, Kejnovská, Iva, Foldynová-Trantírková, Silvie, Andäng, Michael, Trantírek, Lukáš, Vorlíčková, Michaela

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

Year:

2016

Language:

english

File:

PDF, 1006 KB

english, 2016

29

An inactivating mutation in intestinal cell kinase, ICK , impairs hedgehog signalling and causes short rib-polydactyly syndrome

Paige Taylor, S., Kunova Bosakova, Michaela, Varecha, Miroslav, Balek, Lukas, Barta, Tomas, Trantirek, Lukas, Jelinkova, Iva, Duran, Ivan, Vesela, Iva, Forlenza, Kimberly N., Martin, Jorge H., Hampl,

Journal:

Human Molecular Genetics

Year:

2016

Language:

english

File:

PDF, 2.97 MB

english, 2016

30

HERMES â A Software Tool for the Prediction and Analysis of MagneticâFieldâInduced Residual Dipolar Couplings in Nucleic Acids

Giassa, Ilektra-Chara, VavÅinskÃ¡, Andrea, Zelinka, JiÅÃ, Å ebera, Jakub, SychrovskÃ½, VladimÃr, Boelens, Rolf, Fiala, Radovan, Trantirek, Lukas

Journal:

Year:

2020

File:

PDF, 1.69 MB

2020

31

Structure and function of the native and recombinant mitochondrial MRP1/MRP2 complex from Trypanosoma brucei

Alena Zíková, Jana Kopečná, Maria A. Schumacher, Kenneth Stuart, Lukáš Trantírek, Julius Lukeš

Journal:

International Journal for Parasitology

Year:

2008

Language:

english

File:

PDF, 854 KB

english, 2008

32

Determination of the glycosidic torsion angles in uniformly13C-labeled nucleic acids from vicinal coupling constants3JC2/4−H1′and3JC6/8−H1′

Lukáš Trantírek, Richard Štefl, James E. Masse, Juli Feigon, Vladimír Sklenář

Journal:

Journal of Biomolecular NMR

Year:

2002

Language:

english

File:

PDF, 217 KB

english, 2002

33

Sugar Pucker Modulates the Cross-Correlated Relaxation Rates across the Glycosidic Bond in DNA

Sychrovský, Vladimír, Müller, Norbert, Schneider, Bohdan, Smrečki, Vilko, Špirko, Vladimir, Šponer, Jiří, Trantírek, Lukáš

Journal:

Journal of the American Chemical Society

Year:

2005

Language:

english

File:

PDF, 96 KB

english, 2005

34

The activation of N-glycosidic bond cleavage performed by base-excision repair enzyme hOGG1; theoretical study of the role of Lys 249 residue in activation of G, OxoG and FapyG

Šebera, Jakub, Trantírek, Lukáš, Tanaka, Yoshiyuki, Nencka, Radim, Fukal, Jiří, Sychrovský, Vladimír

Journal:

Year:

2014

Language:

english

File:

PDF, 666 KB

english, 2014

35

Clustered abasic lesions profoundly change the structure and stability of human telomeric G-quadruplexes

Kejnovská, Iva, Bednářová, Klára, Renčiuk, Daniel, Dvořáková, Zuzana, Školáková, Petra, Trantírek, Lukáš, Fiala, Radovan, Vorlíčková, Michaela, Sagi, Janos

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 4.25 MB

english, 2017

36

Analysis of binding interfaces of the human scaffold protein AXIN1 by peptide microarrays

Harnoš, Jakub, Ryneš, Jan, Víšková, Pavlína, Trantírková, Silvie Foldýnová, Ešner, Lola Bajard, Trantírek, Lukáš, Bryja, Vítězslav

Journal:

Journal of Biological Chemistry

Year:

2018

Language:

english

File:

PDF, 1.35 MB

english, 2018

37

The PTH/PTHrP-SIK3 pathway affects skeletogenesis through altered mTOR signaling

Csukasi, Fabiana, Duran, Ivan, Barad, Maya, Barta, Tomas, Gudernova, Iva, Trantirek, Lukas, Martin, Jorge H., Kuo, Caroline Y., Woods, Jeremy, Lee, Hane, Cohn, Daniel H., Krejci, Pavel, Krakow, Debora

Journal:

Science Translational Medicine

Year:

2018

Language:

english

File:

PDF, 6.32 MB

english, 2018

38

Evaluation of stability of DNA i-motifs in the nuclei of living mammalian cells

Dzatko, Simon, Krafcikova, Michaela, Hänsel-Hertsch, Robert, Fessl, Tomas, Fiala, Radovan, Loja, Tomas, Krafcik, Daniel, Mergny, Jean-Louis, Foldynova-Trantirkova, Silvie, Trantirek, Lukas

Journal:

Angewandte Chemie

Year:

2017

Language:

english

File:

PDF, 2.92 MB

english, 2017

39

Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic15N chemical shielding anisotropy tensors

Jiří Emmer, Andrea Vavrinská, Vladimír Sychrovský, Ladislav Benda, Zdeněk Kříž, Jaroslav Koča, Rolf Boelens, Vladimír Sklenář, Lukáš Trantírek

Journal:

Journal of Biomolecular NMR

Year:

2013

Language:

english

File:

PDF, 414 KB

english, 2013

40

Metabolic stress regulates ERK activity by controlling KSR‐RAF heterodimerization

Verlande, Amandine, Krafčíková, Michaela, Potěšil, David, Trantírek, Lukáš, Zdráhal, Zbyněk, Elkalaf, Moustafa, Trnka, Jan, Souček, Karel, Rauch, Nora, Rauch, Jens, Kolch, Walter, Uldrijan, Stjepan

Journal:

Year:

2017

Language:

english

File:

PDF, 1.83 MB

english, 2017

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